snpTree 1.1 (SNPs phylogenetic tree)

OBS:This Service is currently out of order! Sorry for the inconvenience.

View the version history of this server.

Select reference genome  

Select type of your reads
Illumina Single end reads Illumina Paired end reads 454 Single end reads 454 Paired end reads Ion Torrent Single end reads Assembled Genomes SNPs files (vcf)

Select minimum coverage
5 10 15 20 25 30 35 40 45 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500

Select minimum distance between SNPs (prune)
5 10 15 20 25 30 35 40 45 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500

Select minimum distance to end of sequence (option for assemble genomes)
0 5 10 15 20 25 30 35 40 45 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500

Compared to Genome Database