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Services

Datasets

Overview of Services

Workflows

Bacterial Analysis Pipeline (Batch Upload)

Phenotyping

ResFinder
PathogenFinder
VirulenceFinder
Restriction-ModificationFinder

Typing

MLST
pMLST
PlasmidFinder
KmerFinder
SpeciesFinder
Reads2Type
Tapir (OBS! Only works for Firefox)
TaxonomyFinder
SerotypeFinder
spaTyper
FimTyper
PAst

Phylogeny

snpTree
CSI Phylogeny
NDtree
TreeViewer

Genome Assembly

Assembler
SPAdes

Other

PanFunPro
MyDbFinder
SPIFinder
HostPhinder
DeHumanizer

These services have in part been developed in the COMPARE project that has received funding from the European Union's Horizon 2020 research and innovation programme under grant agreement No 643476.

Support

Technical problems